PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004062.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 399aa MW: 46130.6 Da PI: 4.3054

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004062.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	53	1.1e-16	20	155	6	128
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikev.diy.....kvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratk 79 FhPt+ elv ++L +k++ +++ ++i+++ +i+ + Pw++ + ++k +++ +yf+s ++k +++++r++r++ Rmu_sc0004062.1_g000013.1 20 TFHPTEAELVGFFLYNKISMASNPG-NHIQTFpEICiygetGLPPWEIWRvyqQFKFpHQDFLYFYSWAKKVSPNKSRNSRTVG 102 5***************9999666.3344444444112224589999632333333344456**************755 PP NAM 80 ..sgyWkatgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128 g+W++t ++v+ + ++e+ g + + + k+++++ +++ W+m+ey++ Rmu_sc0004062.1_g000013.1 103 sdGGTWSETEAGRSVYISgSEEAFGKVRKFRYEKNKDKTfVHHAAWLMEEYTI 155 4589********9855667899999999977555415699*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MALVDQFMTL DQLDVGVVKT FHPTEAELVG FFLYNKISMA SNPGNHIQTF PEICIYGETG 60 LPPWEIWRVY QQFKFPHQDF LYFYSWAKKV SPNKSRNSRT VGSDGGTWSE TEAGRSVYIS 120 GSEEAFGKVR KFRYEKNKDK TFVHHAAWLM EEYTINQAPD LALCRLKVND KGGGRKKRKK 180 SFDETNEDQN VRSKKCLKNR KVEPRRDQTS FLDPEEQQEG SASFATTTSQ LILSPYHHED 240 DQAVQVVPEN NYDYDELQQI LFSDDDCMDE NLMFSPTILF DDAQLMASVD QSIASEQQQQ 300 EDSDYSLAPQ QQLEPDNRCQ EEDQVQQQED QPSSSHSHEQ QQLIGDGDLM IYGQHDYNIP 360 LDNDFLWSDE FNGLLTHEDQ LGAVPWRDSD DQFQYSDIL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MALVDQFMTL DQLDVGVVKT FHPTEAELVG FFLYNKISMA SNPGNHIQTF PEICIYGETG  60
LPPWEIWRVY QQFKFPHQDF LYFYSWAKKV SPNKSRNSRT VGSDGGTWSE TEAGRSVYIS  120
GSEEAFGKVR KFRYEKNKDK TFVHHAAWLM EEYTINQAPD LALCRLKVND KGGGRKKRKK  180
SFDETNEDQN VRSKKCLKNR KVEPRRDQTS FLDPEEQQEG SASFATTTSQ LILSPYHHED  240
DQAVQVVPEN NYDYDELQQI LFSDDDCMDE NLMFSPTILF DDAQLMASVD QSIASEQQQQ  300
EDSDYSLAPQ QQLEPDNRCQ EEDQVQQQED QPSSSHSHEQ QQLIGDGDLM IYGQHDYNIP  360
LDNDFLWSDE FNGLLTHEDQ LGAVPWRDSD DQFQYSDIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	180	KKRKK
2	176	198	KKRKKSFDETNEDQNVRSKKCLK
3	177	199	KKRKKSFDETNEDQNVRSKKCLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61910.1	2e-09	NAC family protein