PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004080.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 232aa MW: 25500.2 Da PI: 8.5294

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004080.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.8	9.5e-30	53	143	1	90
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPv + + + Rmu_sc0004080.1_g000014.1 53 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRNDAVVTISYEAQARLSDPVASLQTELAMV 136 7*********************9989*********************************************999998888 PP DUF260 84 qqqleql 90 q ql ++ Rmu_sc0004080.1_g000014.1 137 QTQLINS 143 8887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MADQPQPQGN HRGTSESRRR KATSAATGKQ QQRTAVDHHL HHHQSSSTAA SAPCGACKFL 60 RRKCISGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPLNRRNDA VVTISYEAQA 120 RLSDPVASLQ TELAMVQTQL INSRFAFANA IQSSQQHQEQ QQNMALLQPA YSNNSSASTN 180 PINMRSFTSN FNHDLAAETA PCSHSLEPLL LSRPSQDEEE DEQQSQVPHH FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-61	LBD family protein