PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004093.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 236aa    MW: 26955.9 Da    PI: 8.7191
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004093.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind56.48.2e-18501442102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                F +k++e+++ + l+ +i+w+++g+ + ++   +f k v  +   + +f+S++RQL+ YgFkk ++++ k        e++h++
  Rmu_sc0004093.1_g000001.1  50 FPSKVFEVVDYPPLDYCIRWNTEGTGLQIVSDADFRK-VALNLLCQGSFSSLTRQLQAYGFKKNTKSRCK-------HEYSHEK 125
                                889**********************************.66688899**********************99.......9999999 PP

                                ..XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 ..Fkkgkkellekikrkks 102
                                  F + +k++l+ki rk  
  Rmu_sc0004093.1_g000001.1 126 gyFLRAQKQKLKKICRKPP 144
                                99**************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MEVNEIAQVL LQIQDEEVFP RQKFQAHAPP PEAPAHELEQ FKRRLAGLDF PSKVFEVVDY  60
PPLDYCIRWN TEGTGLQIVS DADFRKVALN LLCQGSFSSL TRQLQAYGFK KNTKSRCKHE  120
YSHEKGYFLR AQKQKLKKIC RKPPQATGKT PGEGREDPLL NVEGRLTSLE AKMTCLQAMS  180
NVEAWGMDQW LRVEGRQTSL EAKLTSLDAK SDRMISEMVA IWQLVESRAH RLTPHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-12HSF family protein