PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004110.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 257aa    MW: 29714.9 Da    PI: 8.2989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004110.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.8e-115093346
                               SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46
                               +WT eEd  l  a+ ++Gg  +W++Ia+ +  +Rt  qc++r+ +
  Rmu_sc0004110.1_g000008.1 50 KWTLEEDTCLTVAHILFGGTkNWNKIAQLVW-RRTQVQCRDRFVN 93
                               8*****************99***********.**********976 PP
2Myb_DNA-binding43.95.7e-14102145247
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                g WT+eEd +l  a+ ++G   W++++++++  Rt+++c  rw  +
  Rmu_sc0004110.1_g000008.1 102 GEWTEEEDSILRAAIGEHGHC-WSKVSACVP-QRTDNMCWRRWKVL 145
                                78*****************99.*********.***********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MEQGRGCETQ CLVRVIGSPW LLLWEEELVR NALIDGKKQF IQPGQEKVRK WTLEEDTCLT  60
VAHILFGGTK NWNKIAQLVW RRTQVQCRDR FVNSLEPSLK FGEWTEEEDS ILRAAIGEHG  120
HCWSKVSACV PQRTDNMCWR RWKVLFPEEV LVLREERRIR KAALICNFVD CEKERPALGP  180
NDFLVPEDNS TKTLTFPRKT GNIKRGSQSG KTNNISSNCQ VMKKIRSKRR KNYDKICSNE  240
ADICNGDDAS DWDDTIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.37e-37MYB family protein