PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004132.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 362aa MW: 40808.1 Da PI: 6.8735

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004132.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.9	6.4e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++q+G g+W++ ++ g++R++k+c++rw +yl Rmu_sc0004132.1_g000011.1 14 KGPWTPEEDQKLVQYIQQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	45.1	2.3e-14	67	145	1	48
TSSS-HHHHHHHHHHHHHTTTT................................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................................tWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ +W++Ia ++ gRt++++k++w+++l Rmu_sc0004132.1_g000011.1 67 RGNFSQEEEQTILHLHSILGNKytllqpissirsgsflslcleyhkltrlilttRWSAIATHLD-GRTDNEIKNFWNTHL 145 89************************************************************.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGKSLCCDEP GLKKGPWTPE EDQKLVQYIQ QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF SQEEEQTILH LHSILGNKYT LLQPISSIRS GSFLSLCLEY HKLTRLILTT 120 RWSAIATHLD GRTDNEIKNF WNTHLKKKLI QMGIDPMTHQ PRTDLFSNLQ DLLQPQYQLL 180 DQHAATTLHG AAEAVAQLVK LQYLQQQYVL QSHLLNPSVG SYAPPPIKEN LPVLNSSHVV 240 LENPSSFSQP LHYGTLEPHQ DDPQVRFSTF AVPEIDEMGQ GSKFTPMVSS LCQAEKNPPE 300 IDEYCPWLLQ YSSNIPTPLG STLINNPGDA SCSTSSNGGI RSSTSSSYWP ELFLEETKTN 360 YD

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGKSLCCDEP GLKKGPWTPE EDQKLVQYIQ QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF SQEEEQTILH LHSILGNKYT LLQPISSIRS GSFLSLCLEY HKLTRLILTT  120
RWSAIATHLD GRTDNEIKNF WNTHLKKKLI QMGIDPMTHQ PRTDLFSNLQ DLLQPQYQLL  180
DQHAATTLHG AAEAVAQLVK LQYLQQQYVL QSHLLNPSVG SYAPPPIKEN LPVLNSSHVV  240
LENPSSFSQP LHYGTLEPHQ DDPQVRFSTF AVPEIDEMGQ GSKFTPMVSS LCQAEKNPPE  300
IDEYCPWLLQ YSSNIPTPLG STLINNPGDA SCSTSSNGGI RSSTSSSYWP ELFLEETKTN  360
YD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-81	MYB family protein