PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004153.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 213aa    MW: 23805.4 Da    PI: 4.6655
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004153.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.43.8e-163090357
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0004153.1_g000005.1 30 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLqqygQIEDKNVFFWFQNLKARERQ 90
                               7****************96569*************************************97 PP
2Wus_type_Homeobox95.25.7e-312991364
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                               ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0004153.1_g000005.1 29 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLQQYGQIEDKNVFFWFQNLKARERQK 91
                               78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MEPRTLQLME QQTQQQIEDG GNNQAAGTNN RWAPTPPQLR ILKGLYYDKG FKYPTPEQIQ  60
EICLHLQQYG QIEDKNVFFW FQNLKARERQ KLKEFRNVPV GGSLDLNFGS TSSTDDGRSI  120
DLNFGSTSST STDRSIDLNF GLRVGYGVDG SIMEQRGEYH QEIETLPLFP MHGEDIFGNM  180
KTTSEGGSGY GGGSRISLEL SLNSYGDVAL SSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-22WOX family protein