PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004277.1_g000045.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 318aa    MW: 36523.9 Da    PI: 4.0917
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004277.1_g000045.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.53.5e-12131306111
                        NAM   6 rFhPtdeelvveyLkkkvegkklelee..vikevdiy...kvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratk. 79 
                                 F+Pt+ elv ++L +k++  + + ++  +++++ iy    + Pw++ +   ++k  +++ +yfFs ++k +++++r++ +++ 
  Rmu_sc0004277.1_g000045.1  13 TFQPTEAELVGFFLYNKISMASSSGNQiqTFPKICIYgetGLPPWEIWRiyqQFKFpHQDFLYFFSWTKKVSPNKSRNSGTVSs 96 
                                5*****************99995552211233433332115689999632333333334456************9999985433 PP

                        NAM  80 .sgyWkatgkdkevlskkgelvg.lkktLvfykg 111
                                  g+W++t   ++vl+ +++  g  k+ +v  k+
  Rmu_sc0004277.1_g000045.1  97 dGGTWRETEAARPVLKVNDKGGGrNKRKFVAEKN 130
                                499************9654433313444444333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MTLDQLDVGV VKTFQPTEAE LVGFFLYNKI SMASSSGNQI QTFPKICIYG ETGLPPWEIW  60
RIYQQFKFPH QDFLYFFSWT KKVSPNKSRN SGTVSSDGGT WRETEAARPV LKVNDKGGGR  120
NKRKFVAEKN KDQNQQEGGA SFASTTSQLI PYHHEDDQVV QVVPENNYDY DELQQILFSD  180
DDSMDENLKF SPTILFDDND DMLNDAQIMA SVDQSIASEQ QRQQYSDYSL VPQQQLEPDS  240
RCQVEDQTQL QQQDQPSSSH SHEQQQLIGD DDLMISGQHD YNIPLDNDFL WSDEFNGLFT  300
HEDQLGALPW RDSDDLFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.18e-06NAC family protein