PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004340.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 379aa    MW: 41161 Da    PI: 6.8342
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004340.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08831091745
                                HHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  17 kqlGggtWktIartmgkgRtlkqcksrwq 45 
                                + +G   W+ Ia++++ gRt++++k++w+
  Rmu_sc0004340.1_g000009.1  83 RTFGAV-WAQIAKHLP-GRTDNEVKNFWN 109
                                556666.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MAAGAQFLNL QRSGGGGGAG LARLGHGHPK PLHHGDRGRR FWAATSPKLV ANESTSKKKV  60
KIDPWPPSGK PSAPESCRSI DVRTFGAVWA QIAKHLPGRT DNEVKNFWNS SIKKKLIPHD  120
VIPALASFSH FLNPSNAGSD QESFFTTLIT NPNFGLQQEQ PYLPFPTPLP PSSFYHGDHS  180
ILKLDYTNYS SNRLHFPTPI QLPSNYSSSY DSSWSLGYQP HLFDSNHQQD QILNNIEVAP  240
HFNIGNELMV PSVASLPGYD HENLSAVPTM PQSCEINIDG SACRAMPFDP PDNHPPQELD  300
SLAKVSSCFG PFGDHGSYNP FDLQLPSNQV ELVDPVISSL PTLAQPSPSS ASSSLLPLPS  360
SQLFITNRNV LSSLGSLAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-14MYB family protein