PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004359.1_g000049.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 323aa    MW: 36732.4 Da    PI: 5.2966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004359.1_g000049.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-164188148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+W+t Ed++l d+v  +G g+W+  +++ g++R++k+c++rw +yl
  Rmu_sc0004359.1_g000049.1 41 RGAWSTMEDQILTDYVLTYGEGRWRDLPQKAGLNRCGKSCRLRWINYL 88
                               89********************************************97 PP
2Myb_DNA-binding50.64.6e-1694138147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg+ ++eE++l+ +++k+lG++ W++Ia +++ gRt++++k++w++ 
  Rmu_sc0004359.1_g000049.1  94 RGNISAEEEDLIMRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 138
                                7899******************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MHTCVSQYGK ADLSCSLISL KISDILKMGR KPCCEKEGVI RGAWSTMEDQ ILTDYVLTYG  60
EGRWRDLPQK AGLNRCGKSC RLRWINYLRP DIKRGNISAE EEDLIMRLHK LLGNRWSLIA  120
GRLPGRTDNE IKNYWNTTLC KRSPSMEQND EEEASKLKKC TARSKQRVSA ETQKKQVEVI  180
RTKAVKCTKV FIPSHLHSYT NAVTNSASSE YSTEVPGSSA AQEQNFCGLV MDFDINDLLI  240
SDMLESSKDF LQHQVNECHE DQMGDDGAKL EDLLMAEARS ENWMASTHYY PFQPNIDDEH  300
VDLNALSSFL NAADDDDQEW MIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-60MYB family protein