PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004404.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 412aa MW: 46069.3 Da PI: 7.4288

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004404.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.7e-09	79	129	1	47
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47 r WTte+d++l+ avk+ + +Wk++a +g + + ck+rwq++ Rmu_sc0004404.1_g000011.1 79 RRYWTTEDDKKLKYAVKKVAARkgghikDWKKVAFIVG--KRGDLCKDRWQNV 129 567********************************9..45559****96 PP
2	Myb_DNA-binding	22.3	3e-07	136	189	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 +g+W++eEd++l++a + G++ +t ++ k Rtl qc+ r+q++l Rmu_sc0004404.1_g000011.1 136 KGAWSKEEDQRLLNASASCGSNMLNTMLDVFNsssvdgKIRTLHQCQARLQQLL 189 79******************8888888888888888889********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MALISNCIGN KVGISKNVAE SDVVKIGRKI VDISYQGRYW TTEDDKKLKY AVKKVAARKG 60 GHIKDWEKVG FIVGKRGERR YWTTEDDKKL KYAVKKVAAR KGGHIKDWKK VAFIVGKRGD 120 LCKDRWQNVV SPDIKKGAWS KEEDQRLLNA SASCGSNMLN TMLDVFNSSS VDGKIRTLHQ 180 CQARLQQLLN GNHSRKLEEK SVEQGNIAGL YQQKAEGVGD EGVADEGVVD EGVAYAQVAD 240 ALTLLQNNYN GEEELEIGDG LTNLFKTYAE ADAASGIAVH NECKLKFLEL KTKRTYRSIV 300 FKIEEKQKQV IVEATGDPTE TYEAFTDSLP TDECCYAVFD FDLPIPEGVP KRQILFIAWL 360 PDTSREENKK IYASALDSFK RELDGIQIEL EATGPSEIGL DVIRNRAAKH EP

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MALISNCIGN KVGISKNVAE SDVVKIGRKI VDISYQGRYW TTEDDKKLKY AVKKVAARKG  60
GHIKDWEKVG FIVGKRGERR YWTTEDDKKL KYAVKKVAAR KGGHIKDWKK VAFIVGKRGD  120
LCKDRWQNVV SPDIKKGAWS KEEDQRLLNA SASCGSNMLN TMLDVFNSSS VDGKIRTLHQ  180
CQARLQQLLN GNHSRKLEEK SVEQGNIAGL YQQKAEGVGD EGVADEGVVD EGVAYAQVAD  240
ALTLLQNNYN GEEELEIGDG LTNLFKTYAE ADAASGIAVH NECKLKFLEL KTKRTYRSIV  300
FKIEEKQKQV IVEATGDPTE TYEAFTDSLP TDECCYAVFD FDLPIPEGVP KRQILFIAWL  360
PDTSREENKK IYASALDSFK RELDGIQIEL EATGPSEIGL DVIRNRAAKH EP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	6e-08	MYB family protein