PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004435.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 198aa    MW: 21716.7 Da    PI: 10.9352
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004435.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP79.87.4e-25621942132
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaess 78 
                                + +kdrhsk++T++g+Rd R+ l a++a++      +LG+d++sk ++W +++ak+ai+el+         +++s+ ++ + s 
  Rmu_sc0004435.1_g000005.1  62 TNRKDRHSKVYTAKGPRDHRIWLAAHTAIQ-----YRLGYDRPSKVVDWVIKKAKAAIDELPPWnpnsisvQTTSS-QTVPISA 139
                                679*************************76.....9***************************9666555422222.2234444 PP

                        TCP  79 sssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmri 132
                                 + ++n s + ++ +a+ + + ++ s++ ++ + ++s+a a   + er ++ +++
  Rmu_sc0004435.1_g000005.1 140 AQDTQNASLHFSMVEAPsSLSANRGSEERTRVVVAKSSAAAAGMNSERAAKPQCN 194
                                4444444455555555556677777777778888888888888889999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MTPTYFFIST LYLRPISVRE PLNFARAMHS SAASRLALGI RTASSSIASE IVEARGHILR  60
ATNRKDRHSK VYTAKGPRDH RIWLAAHTAI QYRLGYDRPS KVVDWVIKKA KAAIDELPPW  120
NPNSISVQTT SSQTVPISAA QDTQNASLHF SMVEAPSSLS ANRGSEERTR VVVAKSSAAA  180
AGMNSERAAK PQCNFNLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.25e-30TCP family protein