PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004464.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LSD

Protein Properties

Length: 166aa MW: 17351.3 Da PI: 8.5012

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004464.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.5	1.1e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCr +L YPrGA++V+CalC+tV Rmu_sc0004464.1_g000002.1 7 CGGCRSILLYPRGASNVCCALCNTV 31 ************************9 PP
2	zf-LSD1	43.6	4.7e-14	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV Rmu_sc0004464.1_g000002.1 46 CGGCRTLLMHTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	51.4	1.8e-16	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V Rmu_sc0004464.1_g000002.1 84 CGNCRTTLMYPYGAPSVKCAVCQFV 108 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MQSQLVCGGC RSILLYPRGA SNVCCALCNT VTPVPPPGTE MAQLICGGCR TLLMHTRGAT 60 SVRCSCCHTV NLAPAANQCA HINCGNCRTT LMYPYGAPSV KCAVCQFVTN VGMGNVRVPI 120 PVHRPSTSAS MPHSQSQTVV VENPMSVDES GKLVSNVVVG VTTGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-74	LSD family protein