PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004498.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 566aa MW: 59971.1 Da PI: 9.9037

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004498.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.5e-11	188	232	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHH..HHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI..artmgkgRtlkqcksrw 44 r++WT+eEd+ lv av+ +G g+W+ I a+ g Rt++q+ rw Rmu_sc0004498.1_g000008.1 188 RKKWTEEEDLELVSAVNIYGEGNWTQIvkANFKG-DRTANQLSQRW 232 789**********************4444455.*****9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MGFLGRYTAT TILALLQEVA HLLQSEKIDW DKLVANTTTG ITNAREFQML WRHLAYREPL 60 PDKFDDGARP QDVDSDYEYE VEVAPPVSGE ASTEAAACVK VLMASGLPSD SSHLNGTTVE 120 APLTINIPNG QSSKTYEPSA SAKGMNITVP VSIQKQTLPA TTTTAAAKAE GDDANRSTSN 180 IMAPRKKRKK WTEEEDLELV SAVNIYGEGN WTQIVKANFK GDRTANQLSQ RWGIVKKRQK 240 KLGVGEGGTP CIKKEALLAA HQAITHFLDN GPNRASITVG TVGTNANGTS AETNANSRSG 300 VTNGIRNSGL HTTTAEGLNA KKPNRIGSFG STPKGRVTSK KTLPKSNMNP DIIRATAVAA 360 GARIVTQSDA ELLKAAAQAK NTIHIMPQTG GSIKSLTPGG LSIKSEPHPT VHHIRTGTAA 420 TLPSTHPPTR HPGSLKVVSQ TSQQALKIDT SRKITGVNSS PGAEVLRKQV QNEVLPGSGQ 480 VQEGKLESPK QKAESESLLT NAQNLAGSLH TKKDGSNDKA VTGEERRGSI GGGDDPSAVN 540 GEDQNTTLKR TTDVSDHDLK QGGGSH

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MGFLGRYTAT TILALLQEVA HLLQSEKIDW DKLVANTTTG ITNAREFQML WRHLAYREPL  60
PDKFDDGARP QDVDSDYEYE VEVAPPVSGE ASTEAAACVK VLMASGLPSD SSHLNGTTVE  120
APLTINIPNG QSSKTYEPSA SAKGMNITVP VSIQKQTLPA TTTTAAAKAE GDDANRSTSN  180
IMAPRKKRKK WTEEEDLELV SAVNIYGEGN WTQIVKANFK GDRTANQLSQ RWGIVKKRQK  240
KLGVGEGGTP CIKKEALLAA HQAITHFLDN GPNRASITVG TVGTNANGTS AETNANSRSG  300
VTNGIRNSGL HTTTAEGLNA KKPNRIGSFG STPKGRVTSK KTLPKSNMNP DIIRATAVAA  360
GARIVTQSDA ELLKAAAQAK NTIHIMPQTG GSIKSLTPGG LSIKSEPHPT VHHIRTGTAA  420
TLPSTHPPTR HPGSLKVVSQ TSQQALKIDT SRKITGVNSS PGAEVLRKQV QNEVLPGSGQ  480
VQEGKLESPK QKAESESLLT NAQNLAGSLH TKKDGSNDKA VTGEERRGSI GGGDDPSAVN  540
GEDQNTTLKR TTDVSDHDLK QGGGSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	190	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	8e-72	MYB_related family protein