PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004507.1_g000034.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 711aa MW: 81058 Da PI: 9.4094

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004507.1_g000034.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	553	615	1	47
TSSS-HHHHHHHHHHHHH.TTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGgg................tWktIartmgkgRtlkqcksrwqky 47 +grW++eE e l d+v++ l ++ +W+tI++t+g +Rt c ++w++ Rmu_sc0004507.1_g000034.1 553 KGRWSQEEYETLFDLVNMdLRMKvfeekktkhgmlrdniCWETISETLG-TRTNAVCSLKWYNQ 615 79************975777799********************.**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MKTGAERRGT RRALTDLTMA AWSEEAALEW RMTMPPRAAM ETAMWDSNWS QGEEKHLGLG 60 FDRCNDIDPI RLNKTNMGRK ERTPLEFESG KEKKKHKEKR KEKAKKDELE RNSSVLEVCG 120 DKMGKEVEGL KYDKTGGNHM NSGEEANKKK KRRREKEGND MVIDMINKKE LINDGEKSVG 180 KTVEKVDSTG SVKKTQKILE DGKVGVATEY GDVAQINNKG GNKKKKEKKG KREKAGGELV 240 PDVTSDGMEA GVASNCLDGH IVAENMGTGS SETCIRNMEA VDVDGGKTRK KKAKANTLVN 300 GEDSSRNVEV VNVEDCKKRK KAKSEKHVVE DCNRKSEAVN VGNSKKRKKS KSEKRGIAEI 360 CNEDKKKARS SKGRLIAQKS IGAPDNSEKS TPKKASKRVS FADDVEVFSP TDGPNDEHKD 420 LVRGKRFSEE EDKIVKEAVL RYIEEHALGD DGLNMVLRCK SHPEVKNHPE LKNCWKDIGA 480 ALPWRPFKSV YYRAHILFER AEERVWTPEE YEEVKKFHKD RGADWRTLGD KLGKHRIHVK 540 DAWRRIKLPN QKKGRWSQEE YETLFDLVNM DLRMKVFEEK KTKHGMLRDN ICWETISETL 600 GTRTNAVCSL KWYNQLTSPL VSQKLWADID DYRLLDALNS LDACCIEDVD WDDLLEHRPG 660 DVCQKRWHQM VKHIGHHGLK SFPEQVEVLS KRYLAELIEA REIYASKPAV D

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MKTGAERRGT RRALTDLTMA AWSEEAALEW RMTMPPRAAM ETAMWDSNWS QGEEKHLGLG  60
FDRCNDIDPI RLNKTNMGRK ERTPLEFESG KEKKKHKEKR KEKAKKDELE RNSSVLEVCG  120
DKMGKEVEGL KYDKTGGNHM NSGEEANKKK KRRREKEGND MVIDMINKKE LINDGEKSVG  180
KTVEKVDSTG SVKKTQKILE DGKVGVATEY GDVAQINNKG GNKKKKEKKG KREKAGGELV  240
PDVTSDGMEA GVASNCLDGH IVAENMGTGS SETCIRNMEA VDVDGGKTRK KKAKANTLVN  300
GEDSSRNVEV VNVEDCKKRK KAKSEKHVVE DCNRKSEAVN VGNSKKRKKS KSEKRGIAEI  360
CNEDKKKARS SKGRLIAQKS IGAPDNSEKS TPKKASKRVS FADDVEVFSP TDGPNDEHKD  420
LVRGKRFSEE EDKIVKEAVL RYIEEHALGD DGLNMVLRCK SHPEVKNHPE LKNCWKDIGA  480
ALPWRPFKSV YYRAHILFER AEERVWTPEE YEEVKKFHKD RGADWRTLGD KLGKHRIHVK  540
DAWRRIKLPN QKKGRWSQEE YETLFDLVNM DLRMKVFEEK KTKHGMLRDN ICWETISETL  600
GTRTNAVCSL KWYNQLTSPL VSQKLWADID DYRLLDALNS LDACCIEDVD WDDLLEHRPG  660
DVCQKRWHQM VKHIGHHGLK SFPEQVEVLS KRYLAELIEA REIYASKPAV D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	107	RKEKAKKD
2	148	153	KKKKRR
3	148	154	KKKKRRR
4	149	155	KKKKRRR
5	149	154	KKKRRR
6	289	320	RKKKAKANTLVNGEDSSRNVEVVNVEDCKKRK
7	289	323	RKKKAKANTLVNGEDSSRNVEVVNVEDCKKRKKAK
8	317	321	KKRKK
9	317	348	RKKKAKANTLVNGEDSSRNVEVVNVEDCKKRK
10	317	351	RKKKAKANTLVNGEDSSRNVEVVNVEDCKKRKKAK
11	318	349	RKKKAKANTLVNGEDSSRNVEVVNVEDCKKRK
12	318	352	RKKKAKANTLVNGEDSSRNVEVVNVEDCKKRKKAK
13	345	349	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-123	MYB_related family protein