PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004510.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 682aa    MW: 75004.6 Da    PI: 5.8997
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004510.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.69.9e-27200253155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                kpr++W  eLH++Fv av+qL G e+A+Pk+il+lm+v+gL++e+v+SHLQkYR 
  Rmu_sc0004510.1_g000003.1 200 KPRVVWYGELHRKFVAAVNQL-GVERAVPKKILDLMDVEGLSRENVASHLQKYRQ 253
                                79*******************.********************************6 PP
2Myb_DNA-binding30.96.4e-10203252248
                                SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                  W  e++ ++v av+qlG +   +k+I   m  +g++++++ s++qky+
  Rmu_sc0004510.1_g000003.1 203 VVWYGELHRKFVAAVNQLGVEraVPKKILDLMDvEGLSRENVASHLQKYR 252
                                56888********************************************7 PP
3Response_reg74.63.8e-25161241109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vl vdD+p+ ++ l+ +l+k +y +v++a ++ +ale+l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++++++
  Rmu_sc0004510.1_g000003.1  16 VLAVDDDPTCLKFLEGLLRKCKY-HVTTANQAIKALEMLRENRdkYDLVISDVNMPDMDGFQLLELVGL-EMDLPVIMLSGYSD 97 
                                799********************.***************999889*******************87754.558*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                 +++ + ++ Ga  +l Kp+ +eel +
  Rmu_sc0004510.1_g000003.1  98 FKLVMKGISHGACNYLLKPVRIEELKN 124
                                ************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    
MTVEDQRDRF PEGMRVLAVD DDPTCLKFLE GLLRKCKYHV TTANQAIKAL EMLRENRDKY  60
DLVISDVNMP DMDGFQLLEL VGLEMDLPVI MLSGYSDFKL VMKGISHGAC NYLLKPVRIE  120
ELKNIWQHVV RKKFDSKDQK KSSNQDKSNG IGEGVQGASP TGSSDQNGKL SKKRKDQNGD  180
EEEESEDDEH ETEDSSSQKK PRVVWYGELH RKFVAAVNQL GVERAVPKKI LDLMDVEGLS  240
RENVASHLQK YRQYLKRISS GMVGSLGGKE SSYVRMGVLD GSRDLQSLRS GRISSTTLST  300
YTSGGMLSRL NSPAGLSTGG ITSSGLGQPG HSQNVSNYIN PFAKLQPTVP PNQSSNSFQA  360
TPALLQLNQL QQSKCITHNG KSYPDNDSTN YTISSTFRNS GVSSSPLPSD SNFSSNHLML  420
HGTPQQTHGT GVFGNPTSVK VSFDIGISGS PNFLDYNRCS ENFQGGARLS SFPSNALPMS  480
EPFNHGQMHA NNLGVFSGRP QIGNTLNDFS SVSALSAPVD ELRGNAQNQE GLIGDVVPTL  540
SYMPKQRWEE HKEGYNHELN QTFSAINSPG SALGVNGRVS QSLDQNVAVC SYERNSSLFD  600
QLNGATAMFE QPSEAGKSSM ETKMKLNEDY FLEQIKSPSG FVQNSYESLN DIMSTIMKRE  660
QNENLLLDAE FGFDAYSLGS CM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-104ARR-B family protein