PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004514.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 361aa    MW: 40443.9 Da    PI: 6.7403
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004514.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34371292103
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                F++k+y++++d+++++li w + +nsf+v+++ ef++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++
  Rmu_sc0004514.1_g000019.1  37 FVMKTYQMVSDPTTDRLIAWGRANNSFIVVEPLEFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEW 111
                                9********************999*****************************************999.........******* PP

                                XXXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkkse 103
                                F +g+++ll+++ r+k++
  Rmu_sc0004514.1_g000019.1 112 FLRGQTHLLKNVVRRKHN 129
                                ************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MITNTSHGGE QQHRRLVQNP RASEKPMEDN GNVVAPFVMK TYQMVSDPTT DRLIAWGRAN  60
NSFIVVEPLE FSQRLLPAYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE WFLRGQTHLL  120
KNVVRRKHNN NRAVLNTTTA YGKSEELDDE EIATEIARLR QEQRSLEEEV ENMSKRLEAT  180
ERRPQQMMAF LHRVAEDPEI LPRMMLEKDR RLAEGLGAKK RRLVIASTSS TSSSGMGATA  240
SVKTEDEVDG AMGVISSPET GFEMESFSRG STSPEASTAQ GWWSQKRVVG RNRSDKELYG  300
NSTGLATQSG HGNGNSSHSG YGFGPFGYSG NRSGSGEVGY FAELEESPPP PYPFSLLEGG  360
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-72HSF family protein