PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004517.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 277aa MW: 31998.5 Da PI: 10.5669

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004517.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	26	45	5	23
TTTEEESSHHHHHHHHHH.T CS zf-C2H2 5 dCgksFsrksnLkrHirt.H 23 C ++F+ ksnL++H + H Rmu_sc0004517.1_g000007.1 26 GCLQTFTKKSNLRQHVKAvH 45 6**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MRPPEAGGLR RLPQWAALKA GSDYEGCLQT FTKKSNLRQH VKAVHLENKP FVCCFPGCGK 60 RFAYKHVKDN HEKSGCHVHA HGDFEEADEK FRSRPRGGRK RQCPTVEMLV RKRRHFRRIW 120 VQERGFKIQD RPQNRFVISF DLKKDKNKAI KMETLFFWMK ITNIPPTLEV KETIMNVASI 180 VGSLEIDQKL FDITGKIRVH VAHEITRPFL LKKTLKLALG VIEEISFFFE NLIGRCRKCN 240 LIFHENGTCL VATPHKPDPI TAAPPRLDLV SPFTGFK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	114	RKRQCPTVEMLVRKRR
2	111	146	RKRRHFRRIWVQERGFKIQDRPQNRFVISFDLKKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	2e-33	C2H2 family protein