PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004523.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 282aa    MW: 31495.1 Da    PI: 6.43
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004523.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08148188954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Rmu_sc0004523.1_g000002.1 148 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 188
                                699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDHTNYLNNQ LGNNLVSAAG DHLDDHVGME EPIQLHHHHH HQILYDSVWP NFPLQLHHQV  60
PSSSSTHLHY DQFGHHDQLV LPGNYSSFMD QEDIQHEEEP EEEEELGAMK EMMYKIAAMQ  120
PVDIDPATIQ KPKRRNVRIS DDPQSVAARH RRERISEKIR ILQRLVPGGT KMDTASMLDE  180
AIRYVKFLKR QIRLLQQSSH HHPHQQCINV NAGILGTPSA STAAALTGGG GALDWLPPPI  240
PGSATSSSTE TPTTRPALGF RTFGGSRGDI AALSFNHEVL SD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.18e-47bHLH family protein