PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004550.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 323aa MW: 36167.5 Da PI: 10.1789

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004550.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.8	1.4e-13	105	187	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W+++ + +Li+a ++ rl+rg+l++++W+ev++ + r++ + ++ qCk++++ l+k+yk +k st+ + Rmu_sc0004550.1_g000009.1 105 CWSDDATSVLITAWGDRYLRLNRGNLRQKDWKEVADSVnsrRDGAVFKTDGQCKNRIDTLKKKYKLEKSKPFP------STWIF 182 7************************************98888999****************98865543......56777 PP trihelix 82 fdqle 86 +d+l+ Rmu_sc0004550.1_g000009.1 183 YDSLD 187 77765 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MKQPSTQGRT CVLEAKQFHM VKLEQLVVCP NPNRKPDVTA GRIHGQISIP SPSPILFPIS 60 HPLPYNTSRF HSNSPTLSLS LSLSTRTRPM ERPTRPYAPG GREDCWSDDA TSVLITAWGD 120 RYLRLNRGNL RQKDWKEVAD SVNSRRDGAV FKTDGQCKNR IDTLKKKYKL EKSKPFPSTW 180 IFYDSLDSLI GVPSSNAAAL TRPPKPLTLA LTLKSAADPS PLGFRRCGST ESDGEDDVEG 240 GGVGLAGGAA CRQLARAILK FGEIYERMES SKQEQMVELE KQRMAFTKEL EVQRLNMFMD 300 AQLELEKMKK RPKYSKHSSG KKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11100.1	2e-33	Trihelix family protein