PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004608.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 460aa MW: 52759.7 Da PI: 9.8163

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004608.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.9	8.6e-49	22	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 pG+rFhPtdeelv +yL++kve+k+++l e ik +diyk++PwdLpk + +ekewyfF++r kky+++ r+nr+tksg+Wk Rmu_sc0004608.1_g000002.1 22 LPGYRFHPTDEELVRFYLRRKVENKPIRL-ELIKLIDIYKYDPWDLPKaSGLVGEKEWYFFCRRGKKYRNSIRPNRVTKSGFWK 104 59*************************.89***********523344899************************ PP NAM 85 atgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 atg dk+v+s +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl Rmu_sc0004608.1_g000002.1 105 ATGIDKPVYSVEGEFhtcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 151 ******85554566*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MEVQKMMMRD SINNTKDDAD YLPGYRFHPT DEELVRFYLR RKVENKPIRL ELIKLIDIYK 60 YDPWDLPKAS GLVGEKEWYF FCRRGKKYRN SIRPNRVTKS GFWKATGIDK PVYSVEGEFH 120 TCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPATNASTGA NSNINDITQE AEVWTLCRIL 180 KRNNSSRKYE TNWQKTTSKQ SAADSSSKTC SSESDGSFGA PAAQKNDQLE RISTPNFNND 240 HLCEGNNHIS AGQLTLKDEV VDPMVNSYIN FWNLNEYEML RSDNPNWDEL SPMIDCVLNP 300 SPLYRSASKR GKAHLDKKLK TKLKACKKHN NGPWPMAQNH NPTHQGDPQA SNQETTAIDL 360 RCNHPILPPR SDDRRRLPST TIELIKQGQR TRKGNTVPIP DQRPLPLCTM QPHQILVERR 420 LHPPNQPTTN THQSTKSPAA SLLVLRPVDH HHCTKPDQKK

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MEVQKMMMRD SINNTKDDAD YLPGYRFHPT DEELVRFYLR RKVENKPIRL ELIKLIDIYK  60
YDPWDLPKAS GLVGEKEWYF FCRRGKKYRN SIRPNRVTKS GFWKATGIDK PVYSVEGEFH  120
TCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPATNASTGA NSNINDITQE AEVWTLCRIL  180
KRNNSSRKYE TNWQKTTSKQ SAADSSSKTC SSESDGSFGA PAAQKNDQLE RISTPNFNND  240
HLCEGNNHIS AGQLTLKDEV VDPMVNSYIN FWNLNEYEML RSDNPNWDEL SPMIDCVLNP  300
SPLYRSASKR GKAHLDKKLK TKLKACKKHN NGPWPMAQNH NPTHQGDPQA SNQETTAIDL  360
RCNHPILPPR SDDRRRLPST TIELIKQGQR TRKGNTVPIP DQRPLPLCTM QPHQILVERR  420
LHPPNQPTTN THQSTKSPAA SLLVLRPVDH HHCTKPDQKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	8e-82	NAC family protein