PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004614.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 226aa    MW: 24621.1 Da    PI: 4.8711
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004614.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.23.3e-142380657
                               S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               t+t+ ql++L+el++    ++p+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0004614.1_g000004.1 23 TPTPVQLRILQELYYDkvLKNPTPEQIQEICLHLklygQIEDKNVFFWFQNLKARERQ 80
                               689***********96679*************************************97 PP
2Wus_type_Homeobox83.82e-272381764
          Wus_type_Homeobox  7 tPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                               tPtp Q++iL+ely+ + l++P+ e+iq+i  +L+ yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0004614.1_g000004.1 23 TPTPVQLRILQELYYdKVLKNPTPEQIQEICLHLKLYGQIEDKNVFFWFQNLKARERQK 81
                               8************987899***************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MEETTKQPGV VPTRLSGRPI TGTPTPVQLR ILQELYYDKV LKNPTPEQIQ EICLHLKLYG  60
QIEDKNVFFW FQNLKARERQ KLREFQNVRV GGSLDLNFGS TSSTNDGRSI DLNFGSTSST  120
GTDGSIDLHF GSRVSYGADP YSFSLFNANT STTSFGTTGG QSFMEQQGGD HQEVETLPLF  180
PVHGENVLGN PKTTSEEGSA FGYYSGGSGG YNSGSPVSLE LSLNPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-20WOX family protein