PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004621.1_g000024.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 355aa    MW: 41192.9 Da    PI: 5.5097
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004621.1_g000024.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.77.4e-26188235552
                     RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                +s e++s+yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk++sl
  Rmu_sc0004621.1_g000024.1 188 LSRETISSYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLTSL 235
                                7899*****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MTMKSHHQSR SLTPNWVVSK DPENPFSFPN QFSPADFSGY APVLDWENEF PPMVQDYTFI  60
DALPFMESCL PSLDIQPIRN LFPGDDFSFG DNGNENENGV NSELFASGFE RPNHHHQQEQ  120
EQQQQQQQQQ QQQEKQQPNL LLPSNEDQSG ADREHVAEER KRKRRCMRID HEVKSGSSTR  180
SYSSSRLLSR ETISSYFYMP ITQAAKELNI GLTLLKKRCR ELGIRRWPHR KLTSLQTLIR  240
NIQELGKEEE ENEEKLRNAI ELLEREKKLM EEAPDMQLED NTKRLRQACF KANYKKRKIM  300
GMNLIDYPPH SSNFSTIDTR GGKSVAILDN RGDEEDEEIK SLLSDSFSSS SSMMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-39Nin-like family protein