PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004637.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 231aa    MW: 26555.3 Da    PI: 9.1419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004637.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14954148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT eEd ll ++++++G g+W++I+      R++k+c++rw +yl
  Rmu_sc0004637.1_g000011.1  9 RGAWTIEEDNLLRQCIAKHGEGRWRLIPPAAD--RCGKSCRLRWVNYL 54
                               89*****************************8..************97 PP
2Myb_DNA-binding41.72.6e-1360103146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg++  +E +ll +++++lG++ W++Ia +++ gRt++++k++w++
  Rmu_sc0004637.1_g000011.1  60 RGNFEDDEVDLLHRLHNLLGNR-WSLIAGRLP-GRTANDVKNFWNT 103
                                8999******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MEDPSGLRRG AWTIEEDNLL RQCIAKHGEG RWRLIPPAAD RCGKSCRLRW VNYLKPDIKR  60
GNFEDDEVDL LHRLHNLLGN RWSLIAGRLP GRTANDVKNF WNTKRRRDKP QRLVKPIILR  120
PKPRRLISTS SLCLTGQGLI GDQSQLKKNI SMALPTSSAS PTSPIQQEID RLRAFLEEEE  180
SIRTTTCFSL TPEGLFIEDH IQSENSISCR ALPTSTALED QLDWWMTFLD R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.12e-43MYB family protein