PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004638.1_g000024.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 199aa    MW: 23891 Da    PI: 10.4075
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004638.1_g000024.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.52.3e-15645342
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               i n++    tf kR++g+lKK  E+ +LCd+++avii+s+
  Rmu_sc0004638.1_g000024.1  6 IANETFERMTFRKRKKGLLKKVGEITTLCDIKAAVIIYSP 45
                               78999999*******************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MRLRYIANET FERMTFRKRK KGLLKKVGEI TTLCDIKAAV IIYSPFDVEL EVFPSHLEVH  60
EMVTKFRDMP QMDKTRKMIN QETFLRHRID KVREHIRKQR RDNREKEITQ VLKKVGEITI  120
LCDIKVAAII YIPFDSKPEV FPSHPEVHKL LTKFRDIPQM DKTREMVDQK TFYDNELTKF  180
GSRSKSKEET TEKRRSLKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11721RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-29M-type_MADS family protein