PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004642.1_g000024.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 793aa MW: 87731.2 Da PI: 5.0158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004642.1_g000024.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	4.9e-14	570	616	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Rmu_sc0004642.1_g000024.1 570 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 616 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence
MATPPPSSSR LRGMLQSAVQ SVQWTYSLFW QICPQQGMLI WADGYYNGAI KTRKTVQPME 60 VSSEEASLQR SQQLRELYDS LSAGETNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPPG 120 VGLPGKAYTR RQHVWLTGAN EVDSKTFSRA ILAKSARVQT VVCIPLLDGV VELGTTDRVP 180 EDLAFVQHVK TFFVDHHHLP PPKPALSEHS TSNPATSSDH HPRFHSPHLT AIRNNAAANN 240 APPLHAAAQE DEEDEDEEED DQDEEGESDS EAETGRNGRP LAFFVDHHHL PPPKPALSEH 300 STSNPATSSD HHPRFHSPHL TAIRNNAAAN NAPPLHAAAQ EDEEDEDEEE DDQDEEGESD 360 SEAETGRNGR PLAAAAGPNV PAAEPSELMQ LEMSEDIRLG SPDDASNNLD SDFHMLAVSQ 420 SANASNQQRQ ADSYRAESTR RWPPVQPPMT AVQPPPSGPL ALEELTHDDT HYSETVSTIL 480 QTQATRWTDS SSNDYVTYST QSAFAKWTSR ADHHLLVPVE GTSQWLLKYI LFSVPFLHTK 540 YRDENSPKSH DVDGSSRLRK GTSQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD 600 KASILGDTIE YVKQLRKKIQ DLEARNVHLE DDQRTRSAGE MQRSTSMKEL RSGLTVTERS 660 HVGLPGSDKR KLRIVEGSGG AAIAKPKVIE EPTPPPPPPA PEPAPPTPML TGTSLEVSII 720 ESDGLLELQC PYREGLLLDV MQTLRDLRIE TTVVQSSLNS GTFVAELRAK VGKKTTITEV 780 KRAVNQVIPQ SDS

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence

MATPPPSSSR LRGMLQSAVQ SVQWTYSLFW QICPQQGMLI WADGYYNGAI KTRKTVQPME  60
VSSEEASLQR SQQLRELYDS LSAGETNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPPG  120
VGLPGKAYTR RQHVWLTGAN EVDSKTFSRA ILAKSARVQT VVCIPLLDGV VELGTTDRVP  180
EDLAFVQHVK TFFVDHHHLP PPKPALSEHS TSNPATSSDH HPRFHSPHLT AIRNNAAANN  240
APPLHAAAQE DEEDEDEEED DQDEEGESDS EAETGRNGRP LAFFVDHHHL PPPKPALSEH  300
STSNPATSSD HHPRFHSPHL TAIRNNAAAN NAPPLHAAAQ EDEEDEDEEE DDQDEEGESD  360
SEAETGRNGR PLAAAAGPNV PAAEPSELMQ LEMSEDIRLG SPDDASNNLD SDFHMLAVSQ  420
SANASNQQRQ ADSYRAESTR RWPPVQPPMT AVQPPPSGPL ALEELTHDDT HYSETVSTIL  480
QTQATRWTDS SSNDYVTYST QSAFAKWTSR ADHHLLVPVE GTSQWLLKYI LFSVPFLHTK  540
YRDENSPKSH DVDGSSRLRK GTSQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD  600
KASILGDTIE YVKQLRKKIQ DLEARNVHLE DDQRTRSAGE MQRSTSMKEL RSGLTVTERS  660
HVGLPGSDKR KLRIVEGSGG AAIAKPKVIE EPTPPPPPPA PEPAPPTPML TGTSLEVSII  720
ESDGLLELQC PYREGLLLDV MQTLRDLRIE TTVVQSSLNS GTFVAELRAK VGKKTTITEV  780
KRAVNQVIPQ SDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	575	580	ERRRRE
2	576	581	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-103	bHLH family protein