PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004744.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 418aa    MW: 46213.4 Da    PI: 7.6507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004744.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-08143163526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 C +++r G C++Gd+C FaHg
  Rmu_sc0004744.1_g000012.1 143 VCADYRR-GGCSRGDSCEFAHG 163
                                799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MSSVCAEQHK FHTSHHLLSS KKTHNLLREV DIPPRKLLTR RTAAHQDLSF SHDMYGTTDS  60
PRFSASDEAL LRKFLPYNTG ASDDDEDDAS DDPYSSDHFR MFEFKVRRCT RSRSHDWTDC  120
PFAHPGEKAR RRDPRRYHYS GTVCADYRRG GCSRGDSCEF AHGVFECWLH PARYRTEACK  180
DGKNCKRKVC FFAHTPRQLR ILPVNHSRSS SPDEVISPSS GSCKKSIKYL NSANSPSSTH  240
CCLFCRSVTS SPTSTLLGMS HLSPPLSPMS PYGESKCHFS SGLDQMHASA AGMLSYKDVL  300
SELMTSLEAM KFNNMEATSS PVSSSISSAA ANYQNTPLVD VSSYNAFAAA AEDQQQQFIL  360
SPSTPSPSSA GINFFSRGSS TGNCSRKSLV FDEQNNATEI NGGCGPDPDL GWVNDLLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-79C3H family protein