PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004805.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 270aa    MW: 29611.7 Da    PI: 4.5042
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004805.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.41.6e-1547107357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t+ ql++L+el++    ++p+ e+++ +  +l    +++ ++V++WFqN +a+e++
  Rmu_sc0004805.1_g000006.1  47 NRWTPTPAQLRILQELYYDraLKNPTPEQIQGICLHLrpygQIENKNVFFWFQNLKARERQ 107
                                7****************96579*************************************97 PP
2Wus_type_Homeobox92.63.5e-3045108264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp Q++iL+ely+ ++l++P+ e+iq i  +L+ yG+ie+kNVf+WFQN kaRerqk
  Rmu_sc0004805.1_g000006.1  45 TNNRWTPTPAQLRILQELYYdRALKNPTPEQIQGICLHLRPYGQIENKNVFFWFQNLKARERQK 108
                                579***************9879*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ AQQLTEEGGS NQAAGSSANT PIRPTNNRWT PTPAQLRILQ  60
ELYYDRALKN PTPEQIQGIC LHLRPYGQIE NKNVFFWFQN LKARERQKLK EIRNVRVGGS  120
LDLKFGSTSS TDGGRSMDLN FGSTGSTGDD GSIDLTIGSC VGYGVDPYSS SPFNANTNTT  180
YFCTIGGQSF MEQRGGDHQE VETLPLFPEH GQEVETLPLF PEHGEDILGN LKTTSEEGSA  240
FGYYSGGSGC YNSGSPVSLE LSLNPFGAAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-24WOX family protein