PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004825.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 173aa    MW: 19842.8 Da    PI: 10.0262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004825.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51141381128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeelv +yLk+kv + +l++ ++i+ev+++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWk
  Rmu_sc0004825.1_g000004.1  14 LPPGFRFHPTDEELVLQYLKRKVYSCPLPA-SIIPEVEVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWK 93 
                                79****************************.89***************54...46799************************** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Rmu_sc0004825.1_g000004.1  94 ATGLDKQIVASrGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                                ********99857778***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MEKLSFVRNG ELRLPPGFRF HPTDEELVLQ YLKRKVYSCP LPASIIPEVE VCKSDPWDLP  60
GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IVASRGNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRLVL AEDKNNSTTQ SPVPVNNWVL CRIFLKKRGS GPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-96NAC family protein