PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004886.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 260aa    MW: 28535.9 Da    PI: 5.0429
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004886.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.13.9e-56721761102
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaa
  Rmu_sc0004886.1_g000006.1  72 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAA 155
                                89*****998899*********************************************************************** PP

                      NF-YC  82 avtrtdifdflvdivprdelk 102
                                a+trtdifdflvdivprde+k
  Rmu_sc0004886.1_g000006.1 156 AITRTDIFDFLVDIVPRDEIK 176
                                ******************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MDNNPNAAAT ATAITAQHQH QAQSATYPPA QGGPPSSVAA APFHHLLQAQ QQQLQMFWNY  60
QRQEIEQAQQ QQLQMFWNYQ RQEIEQVNDF KNHQLPLARI KKIMKADEDV RMISAEAPVL  120
FAKACELFIL ELTIRSWLHA EENKRRTLQK NDIAAAITRT DIFDFLVDIV PRDEIKDEAG  180
LGAVGMVGTT ASGVPYYYPP IGQPAGAPGG MMIGRPAMDP TGVYAQPPSQ AWQSVWQTAA  240
DDGSYGSGGS SGQGNLDGQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-84NF-YC family protein