PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004898.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 296aa    MW: 32615.5 Da    PI: 8.8923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004898.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.7e-181966148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT++Ed++l   ++q+G g+W++ +++ g+ R++k+c++rw++yl
  Rmu_sc0004898.1_g000006.1 19 RGPWTPQEDKKLFAFIQQHGHGSWRSLPEKAGLQRCGKSCRLRWRNYL 66
                               89*********************************************7 PP
2Myb_DNA-binding51.81.9e-1672117148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+++ +Ed+ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
  Rmu_sc0004898.1_g000006.1  72 RGNFSLQEDQTIIQLHALLGNR-WSAIAANLP-RRTDNEIKNYWNTHL 117
                                89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGKSRTLTNS TATTSEIKRG PWTPQEDKKL FAFIQQHGHG SWRSLPEKAG LQRCGKSCRL  60
RWRNYLNPAI KRGNFSLQED QTIIQLHALL GNRWSAIAAN LPRRTDNEIK NYWNTHLKKR  120
LAKTGFDPVT HKPKTAILAS ANGDPKNLSN LSHIAQWESA RLQAEARFNM GTLMMSKSLA  180
AGGGGGDEAG GDGRATNVVQ EVGSFCNFDG VLGNNGRQFE APKLTKSAAP DFNGVSEESG  240
TDEYGDLFEA LLLQQSYTNT GFDVVDAWTL EQCNDISADY QNVIMSGGLK NPFMFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.15e-86MYB family protein