PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004959.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 549aa MW: 59667.3 Da PI: 7.1554

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004959.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.7e-09	371	418	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Rmu_sc0004959.1_g000001.1 371 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 418 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MENNFFLNAG IPPSLHFETA QSMPSWRSLS TAMDIQSADR NCSSERSPEC FYNPNWDNKS 60 TDHQSVHFES ALSSMVSSPV ASNSNISNES FVIRELIGKL GSIGNTSNEI SATIPANNNS 120 YMGGGNGSTN TSCYSTPVNS PPKLNLPIVD HHLAKEKPPS LGKSMPLNSS VAEFSADPGF 180 AERAAKFSCF GSRSFNGRTT QLGTHTNNSE VAYRSNQLIL GNGNKLPRVS SSPSLKALGS 240 QTEQRTPQLP NAREESKSTV ASEQQNPIGE TGLVPSSSTD MSSRKRKAAS KGKAKDPVKV 300 AEASDISDLN AKRCKPNEGN VNNENGSVKA EEDTKGSTSS DEKPGKTGSK PPEPFKDYIH 360 VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ 420 VEFLSMKLSS VNTTRLDFNM DALMSKEIFQ QQSSSLPHPI FPSDSSAQAI YGHQQSPAHC 480 TVDPLDSALC QSLGMQLPPL NAFSEAMPQY PGFGEDDLQT IVQMGFGQNP NKETEFHGSN 540 QASHMKIER

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MENNFFLNAG IPPSLHFETA QSMPSWRSLS TAMDIQSADR NCSSERSPEC FYNPNWDNKS  60
TDHQSVHFES ALSSMVSSPV ASNSNISNES FVIRELIGKL GSIGNTSNEI SATIPANNNS  120
YMGGGNGSTN TSCYSTPVNS PPKLNLPIVD HHLAKEKPPS LGKSMPLNSS VAEFSADPGF  180
AERAAKFSCF GSRSFNGRTT QLGTHTNNSE VAYRSNQLIL GNGNKLPRVS SSPSLKALGS  240
QTEQRTPQLP NAREESKSTV ASEQQNPIGE TGLVPSSSTD MSSRKRKAAS KGKAKDPVKV  300
AEASDISDLN AKRCKPNEGN VNNENGSVKA EEDTKGSTSS DEKPGKTGSK PPEPFKDYIH  360
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ  420
VEFLSMKLSS VNTTRLDFNM DALMSKEIFQ QQSSSLPHPI FPSDSSAQAI YGHQQSPAHC  480
TVDPLDSALC QSLGMQLPPL NAFSEAMPQY PGFGEDDLQT IVQMGFGQNP NKETEFHGSN  540
QASHMKIER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-98	bHLH family protein