PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004964.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 231aa    MW: 25575.4 Da    PI: 4.7389
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004964.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.56.2e-1548107457
                                -SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                R+++t+ ql++L+el++    ++p+ e+++ +  +l    +++ ++V++WFqN +a+e++
  Rmu_sc0004964.1_g000012.1  48 RWAPTPAQLRILQELYYDrgLKNPNPEQIQGICLHLkpygQIENKNVFFWFQNLKARERQ 107
                                9***************9657**************************************97 PP
2Wus_type_Homeobox941.3e-3046108364
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                + RW+Ptp Q++iL+ely+ +Gl++Pn e+iq i  +L+ yG+ie+kNVf+WFQN kaRerqk
  Rmu_sc0004964.1_g000012.1  46 NIRWAPTPAQLRILQELYYdRGLKNPNPEQIQGICLHLKPYGQIENKNVFFWFQNLKARERQK 108
                                67***************9879*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MEPRTLQLME LQTQQHMELQ QQQPTEEGES NQAAGSSANT PIRPTNIRWA PTPAQLRILQ  60
ELYYDRGLKN PNPEQIQGIC LHLKPYGQIE NKNVFFWFQN LKARERQKLK EIRNVRVGGS  120
LDLKFGSTSS TEGGRSIDLN FGCTDSTGDD GSIDLTLGLR SFMERRGGDH QEVETLPLFP  180
EHGENVLGNL KTTSEEGSAF GYYSGGSGGY NSGSPVSLEL SLNLSGVIDL D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-21WOX family protein