PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004965.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 593aa    MW: 66588.1 Da    PI: 6.0466
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004965.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.14.7e-24199252155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Rmu_sc0004965.1_g000010.1 199 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                                68*******************.9*******************************8 PP
2Myb_DNA-binding39.51.3e-12201251148
                                TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                r  W+ ++++++v+av+q G +   +k+I   m+   +t++++ s++qky+
  Rmu_sc0004965.1_g000010.1 201 RVVWSVDLHQKFVKAVHQIGFDkvGPKKILDLMNvPWLTRENVASHLQKYR 251
                                678***********************************************7 PP
3Response_reg80.36.3e-27191271109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vl+vdD+p+ +++l+++l+k  y ev+++  +++al ll+ek+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge
  Rmu_sc0004965.1_g000010.1  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALYLLREKKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGE 100
                                89*********************.***************999999**********************6644.8*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                 + + + ++ Ga d+l Kp+ ++el++
  Rmu_sc0004965.1_g000010.1 101 TSRVMKGVQHGACDYLLKPIRMKELRN 127
                                ************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    
MESSFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCGLAR DALYLLREKK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKIHEI RDIEGHESID GIQLTRNGSD LYDDGYFLGA DDLISSRKRK  180
DIENKYDDKD FGDSSSTKKA RVVWSVDLHQ KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLSRLQKE NDLKSSFGGM KHSDYATKDP QGIFGVQNSI SIPQHDVTNG  300
SYRFSGNSLV APTVVDPKRL EDDVKGIIPE PVAEPKRGST RSSQVDLSHS YAETKKGLIG  360
NVADSLKIRS SQMGVNHSFA SVESEINFTI PTKYSWIEAQ MKQEHKPVVQ LDNGFNKPQP  420
PGVQHHLQAD LLQPIPSISS RPSILDEETN RPIKNKPSQA AYRNSHISHV SPTITAADSF  480
SEQTKSCVVD QGFDPSSGSL SNMKNQGFNL SCLTNFEPGQ KNLFFGSGSS CASLDDEWQI  540
CLYPADYFGM NLEVSEYNDA EVPAHLYEAM RFGCEYPCES SEYSLADQSL FIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-130ARR-B family protein