PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005118.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 832aa    MW: 90571.5 Da    PI: 6.5403
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005118.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.2e-21135190156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  Rmu_sc0005118.1_g000003.1 135 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 190
                                688999***********************************************999 PP
2START200.86e-633395621206
                                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                                ela++a++elvk+a+  +++W +s     e +n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+
  Rmu_sc0005118.1_g000003.1 339 ELALAAMDELVKLAQT-DELWLRSLeggrEVLNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDSN-RWLEM 420
                                57899******99985.68*********99***********9999899999***************************.***** PP

                                -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS
                      START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148
                                ++    + +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++++  + +v +++l
  Rmu_sc0005118.1_g000003.1 421 FPcmiaRTSTTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRDNSGAPTFVNCRRL 504
                                *************************************************************************9********** PP

                                SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                      START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                pSg+++++++ng+skvtwveh++++++++h l+r+l++sg+ +ga++wvatlqrqc++
  Rmu_sc0005118.1_g000003.1 505 PSGCVVQDMPNGYSKVTWVEHAEYDESQVHHLYRPLLSSGMGFGAQRWVATLQRQCQC 562
                                ********************************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    
MSFGGFLDSS TGSSGGARIV ADIPYNNNHH HHHHHNANHT SMPSSAIAQP RLVTQSLTKS  60
MFNNSPGLSL ALQTNADGGG DAPRMPENFE PNNNVGGRRS REEENEISRS GSDNMDGAGS  120
GDEGDAADNS NPRKKKRYHR HTPQQIQELE ALFKECPHPD EKQRLELSRR LNLETRQVKF  180
WFQNRRTQMK TQLERHENSL LRQENDKLRA ENMSIRDAMR NPICTNCGGP AMIGDISIEE  240
QHLRIDNARL KDELDRVCAL AGKFLGRPIS SLGPSMGPPL PSSALELGVG NNGFGGMSSV  300
ATTMPLGPDF GAGLGGGMPI VAHTRPVAGG LDERTMFLEL ALAAMDELVK LAQTDELWLR  360
SLEGGREVLN HEEYMRSFTP CIGLKPNGFV TEASRETGMV IINSLALVET LMDSNRWLEM  420
FPCMIARTST TDVISSGMGG TRNGALQLMH AELQVLSPLV PVREVNFLRF CKQHAEGVWA  480
VVDVSVDTIR DNSGAPTFVN CRRLPSGCVV QDMPNGYSKV TWVEHAEYDE SQVHHLYRPL  540
LSSGMGFGAQ RWVATLQRQC QCLAILMSST VPARDHANTI TQSGRKSMLK LAQRMTDNFC  600
AGVCASTVHK WNKLHAGNVD EDVRYMTRES MDDPGEPPGI VLSAATSVWL PVSPQRLFNF  660
LRDERLRSEW DILSNGGPMQ EMAHIAKGQD QGNCVSLLRA RAMNANQNSM LILQETCIDA  720
AGSLVVYAPV DIPAMHVVMN GGDSAYVALL PSGFAIVPDG PGSRGSEAKA GQGSSNGGGG  780
EARVSGSLLT MTFQILVNSL PSAKLTVESV ETVNNLISCT VQKIKAALQC ES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein