PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005122.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 475aa MW: 53676.5 Da PI: 9.3584

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005122.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.6e-17	76	118	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT eE+++l++ +k +G++ W+ Ia+ ++ gRt++++k++w+ Rmu_sc0005122.1_g000012.1 76 RTAWTNEEEKILIESHKAYGNK-WAEIAKLLP-GRTENSIKNHWN 118 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MVQVKECDPN MEKGVLLSLS PPVSDSSGDN TALKPASAQL FENDRPYETI NKGRLDRGRG 60 KFRMLWHNHL NPDIKRTAWT NEEEKILIES HKAYGNKWAE IAKLLPGRTE NSIKNHWNCS 120 VKKKLELRSF HISNMESHKI KAGVRKTEAV KQSLDRIANF DKNVETCSIN LDLVLGTPKG 180 REIQIKSLDK GNRSWLTKGA GADNMIKSPP SNLYYDRAAA AYGLNVEQRK EIYHNYGRLR 240 DSHYLSAKQS IKACTTPSCD LWGFPYFHGK NHKPNHPMSL LNNCSDSFDY NRGAGNFLKK 300 PDRPITVERL HESCKVSQAY EETKDAGGAT EHSEASNPGC LCYRPLQQED LDYFLKNGEF 360 PSTDSYIQTA FSSVSLCTPP SQDRGISVDC NDPDSTLRSA ARTFKSSPSI LRKRRHPISR 420 QSLNSEHHYV ISEEISNNSR NSLNILSPCG ETKFHCMARS NVKKLFLSPQ KSQKL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MVQVKECDPN MEKGVLLSLS PPVSDSSGDN TALKPASAQL FENDRPYETI NKGRLDRGRG  60
KFRMLWHNHL NPDIKRTAWT NEEEKILIES HKAYGNKWAE IAKLLPGRTE NSIKNHWNCS  120
VKKKLELRSF HISNMESHKI KAGVRKTEAV KQSLDRIANF DKNVETCSIN LDLVLGTPKG  180
REIQIKSLDK GNRSWLTKGA GADNMIKSPP SNLYYDRAAA AYGLNVEQRK EIYHNYGRLR  240
DSHYLSAKQS IKACTTPSCD LWGFPYFHGK NHKPNHPMSL LNNCSDSFDY NRGAGNFLKK  300
PDRPITVERL HESCKVSQAY EETKDAGGAT EHSEASNPGC LCYRPLQQED LDYFLKNGEF  360
PSTDSYIQTA FSSVSLCTPP SQDRGISVDC NDPDSTLRSA ARTFKSSPSI LRKRRHPISR  420
QSLNSEHHYV ISEEISNNSR NSLNILSPCG ETKFHCMARS NVKKLFLSPQ KSQKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00540.2	5e-28	MYB family protein