PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005134.1_g000019.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 359aa MW: 39151.1 Da PI: 6.2485

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005134.1_g000019.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	15	55	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ +++ + fC+ ++ +lC +C +++H H+ Rmu_sc0005134.1_g000019.1 15 KPCDACKSSPSAVFCRADSAYLCLTCDSKIHCAnklasrHQ 55 68****************************95545666666 PP
2	zf-B_box	27	9.6e-09	56	102	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ Rmu_sc0005134.1_g000019.1 56 RVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 102 5789*****************************66899999999986 PP
3	CCT	69.9	6.4e-24	286	329	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++ Rmu_sc0005134.1_g000019.1 286 REARVMRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRT 329 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGLQAGWTLP GLTPKPCDAC KSSPSAVFCR ADSAYLCLTC DSKIHCANKL ASRHQRVWMC 60 EVCEQAPAAV TCKADAAALC VTCDADIHSA NPLARRHERV PVEPFLDSAE SIVKSTSAAG 120 LNDDTVSSHK NEDADSLLIP NLNFSSKFID ALDIKPGDMF FPEMESLFEL DYPNPIQNSN 180 SGMDSVVPVQ PDPIPPPPVL SQPPRENCFD IDFCRNKLSS SFSYPAQSIS QSLSSSSLDV 240 GVVPDGNSLS DISYPFIPNV NHNGVESGVA AAPATATATQ LSGVDREARV MRYREKRKNR 300 KFQKTIRYAS RKAYAETRPR IKGRFAKRTE TETEVMDRIF NSAPGSYIAD AQYGVVPTF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGLQAGWTLP GLTPKPCDAC KSSPSAVFCR ADSAYLCLTC DSKIHCANKL ASRHQRVWMC  60
EVCEQAPAAV TCKADAAALC VTCDADIHSA NPLARRHERV PVEPFLDSAE SIVKSTSAAG  120
LNDDTVSSHK NEDADSLLIP NLNFSSKFID ALDIKPGDMF FPEMESLFEL DYPNPIQNSN  180
SGMDSVVPVQ PDPIPPPPVL SQPPRENCFD IDFCRNKLSS SFSYPAQSIS QSLSSSSLDV  240
GVVPDGNSLS DISYPFIPNV NHNGVESGVA AAPATATATQ LSGVDREARV MRYREKRKNR  300
KFQKTIRYAS RKAYAETRPR IKGRFAKRTE TETEVMDRIF NSAPGSYIAD AQYGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-101	CO-like family protein