PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005142.1_g000041.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 295aa    MW: 32504 Da    PI: 5.9086
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005142.1_g000041.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.7e-1747107357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                 R+t+t+ ql++L+ l++   ++yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0005142.1_g000041.1  47 YRWTPTPAQLRILQGLYYDkgHKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 107
                                6****************9557**************************************97 PP
2Wus_type_Homeobox94.96.8e-3146108364
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                + RWtPtp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0005142.1_g000041.1  46 TYRWTPTPAQLRILQGLYYdKGHKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 108
                                68***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MEPRTLQLME PQTQQQMELQ AQRQVEDGGN NQAAGSSANT PIRPTTYRWT PTPAQLRILQ  60
GLYYDKGHKY PTPEQIQEIC LHLKQYGQIE DKNVFFWFQN LKARERQKLK EFRNVRVGGS  120
LDLNFGSTSS TDDGRSIDLN FDSTGSTGDD GSIDLTFGSC VGNGVDPYSS SPFNTNTRTT  180
SFGTTGGQSS MEQQGGDHQE VETLPLFPEH GEDPEEAAKR PGLSSPIWIP TMVARATDHE  240
TFSNSIHRKV VRLDEMKRSS LAPTPLAVVG GGSAPNSGGN FRPPPGVKNV FSLHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-22WOX family protein