PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005314.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 224aa MW: 25177.4 Da PI: 9.3679

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005314.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H+++H Rmu_sc0005314.1_g000003.1 25 FTCSFCKREFRSAQALGGHMNVH 47 89*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MDCVKLRFGR EEDLTDISPW TAKNFTCSFC KREFRSAQAL GGHMNVHRRD RARLRLLPPN 60 SILSSSEYSP YPTPTPTPNP NPNPNPKSYF SPSPSSSSLS GANKYLPHLL SPRSTYVSTP 120 SSGTSDHENK KLMIFDSGSH QHHVPAFLNP KKRVKGGSGL DYEFGDLLNG FAGNAQKHHL 180 NDDFKVVRKD EKHINMIRVD LDMGLLIKDP NKEELDLELR LGHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	1e-13	C2H2 family protein