PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005314.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 214aa MW: 23432.5 Da PI: 8.1536

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005314.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.1	8.4e-40	17	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++l Rmu_sc0005314.1_g000014.1 17 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFAL 100 7***********************99**************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+++l+a+l ++k++ Rmu_sc0005314.1_g000014.1 101 QQQVACLQAQLMQVKAQ 117 *********999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MASGSTGSSG TTGTGSPCGA CKFLRRKCAS DCIFAPYFCS EQGPARFAAI HKVFGASNVS 60 KLLLHVPVHD RCEAVVTIAY EAQARIRDPV YGCVAHIFAL QQQVACLQAQ LMQVKAQVAH 120 QNLMNSRTME SQWQGNVNGV TNFPSYPSYM NPISPQSSLD SIDHGSNDVM NYMHETQSSS 180 RSDEFSFQTC SKKRAYNSTD LGELQALALR MMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	4e-66	LBD family protein