PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005314.1_g000015.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 228aa MW: 25134.7 Da PI: 5.4981

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005314.1_g000015.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.3e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++apyf++e+ + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++l Rmu_sc0005314.1_g000015.1 7 PCGACKFLRRKCVRGCIFAPYFCHENgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFAL 90 7*********************9989**************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+ +l+a+la+lk++ Rmu_sc0005314.1_g000015.1 91 QQQVVNLQAQLASLKDQ 107 **********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MTGSGSPCGA CKFLRRKCVR GCIFAPYFCH ENGATHFAAI HKVFGASNVS KLLAHLPVSD 60 RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKDQAPQ SFVNGSAAVA 120 NPNENWFPDL ENSSNSVPQV NSNYHINNGG TTSYYENGIM SSNSIGSSNY DQNSGIRDEN 180 ASYGSFEEVS PSLSSFNMQM YNRQYWGNYD RDVDELQCMT FSYVDQHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-57	LBD family protein