PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005314.1_g000018.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 187aa MW: 20478 Da PI: 6.9888

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005314.1_g000018.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	1e-38	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkCa++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dPvyG+v++i++l Rmu_sc0005314.1_g000018.1 8 PCGACKFLRRKCARGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAQLPVNDRCRAALTISYEAQARVQDPVYGCVSHIFAL 91 7***********************89**************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+ +l+a+la++ke+ Rmu_sc0005314.1_g000018.1 92 QQQVINLQAQLASAKEQ 108 ***********9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MAGSAGSPCG ACKFLRRKCA RGCIFAPYFC HEQGATHFAA IHKVFGASNV SKLLAQLPVN 60 DRCRAALTIS YEAQARVQDP VYGCVSHIFA LQQQVINLQA QLASAKEQAA KSYSTGSDNS 120 MNPSWLQYSE NLNMTNQQQP ISFGNDENFM VPEVLNDIYG SFGVSSNSMS SLDHMQTNSM 180 QWSFDQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-65	LBD family protein