PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005371.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 363aa    MW: 41214.9 Da    PI: 4.3143
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005371.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.61.9e-26305354352
                     RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                +++++e+++kyF+lpi++AAkeL+v++T+LKr+CR+++I+RWPhRki+sl
  Rmu_sc0005371.1_g000008.1 305 DSLEFEEIKKYFDLPITKAAKELKVGVTLLKRRCRELNIMRWPHRKIRSL 354
                                789*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MEYSTQQLFI PKIEENPLEF DYLEYYYQDP FQISTTSLFE APLLEDFHDH EFNSLALPLS  60
EDYNQIPRMG FQGLEDFSTW DFTALDITTA VSSPSHCDNH VLDEKPLPTM VDSIGYLDNV  120
PSDSGHGEVS FKTETSGFSS SHCDSLVFDE KPLTTMVESF TYLDNVPSDL GQHEVSMMSE  180
SCGFSSSHCD SVVFNEKPIS TMVESFDNSN NVPSVLGPHE ASMRTESATA FASSHSNSLV  240
LYEIPLSTIV DSFDYSDIPT PDLGHDEVSV MIENGFPSWD ISDISCKRET SNRRRYNTEM  300
KIKSDSLEFE EIKKYFDLPI TKAAKELKVG VTLLKRRCRE LNIMRWPHRK IRSLNSLIET  360
LKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.17e-23Nin-like family protein