PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005426.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 213aa MW: 23554.5 Da PI: 6.7656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005426.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.7	3.6e-28	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C+++C+l++++ ++q++++ +v+k+FG++ +l++++a++e++r+++++sl++eA r+ +Pv+Ga+g+ Rmu_sc0005426.1_g000011.1 2 SCNGCRVLRKGCSENCMLRQCIewmedRHAQAHATVFVAKFFGRAGLLSFINAVSESQRPALFQSLLFEAVGRTINPVNGATGL 85 6*******************9988777889************************************************ PP DUF260 80 ilklqqqleqlkaelal 96 +l+++++++q+++e +l Rmu_sc0005426.1_g000011.1 86 LLAGNWKVCQAAVEKVL 102 *********999776 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MSCNGCRVLR KGCSENCMLR QCIEWMEDRH AQAHATVFVA KFFGRAGLLS FINAVSESQR 60 PALFQSLLFE AVGRTINPVN GATGLLLAGN WKVCQAAVEK VLSGGALEPL PEYSCRGIHH 120 VRQQRRDERY SSKYSTKKRP ALLAFDDDDD DERPDLDLSL KASSELHRDD HDRAATPSSV 180 EGSETTMLSR SGSSSADCTT NDSEGTRLLR LFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-63	LBD family protein