PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005442.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 223aa    MW: 25064.1 Da    PI: 11.3785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005442.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.00021152196554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   rErrR   + ++   L +l+P +     +K      Le++++YI  L
  Rmu_sc0005442.1_g000012.1 152 DVRRERRRTPAVQKKVKVLSQLVPGC-----RKAPLPNLLEETTDYIAAL 196
                                5679*********************9.....67777789********988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
LNHFFLCSFK ASEFLYLLNC TFGYAAFMAA SFVSNPDPCL DSSRKKRRKV EDDRNPASTT  60
QARWRSDKEQ RIYSTKLVEA LRKVRQGSSS SPVAVSGGKI VKEAADRVLA VAAKGTTRWS  120
RAILRSRLRL SKRLQKCRKA RVTGDSRCKR ADVRRERRRT PAVQKKVKVL SQLVPGCRKA  180
PLPNLLEETT DYIAALEMQV RAMTVLTELL SGAPAANRLN FTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.22e-19bHLH family protein