PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005507.1_g000039.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 247aa    MW: 28261.5 Da    PI: 4.8715
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005507.1_g000039.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.42e-2278163191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fY eYAk++GF  +k + ++sk ++e +++++ C++ g++++++ +     ++r+  +++Cka+l+vk+++dgkw+v+++++e
  Rmu_sc0005507.1_g000039.1  78 SFYLEYAKMTGFAASKIACRRSKVTKEWVEAKYACTRFGTKRKNDAR-----NPRPYMKIDCKAMLHVKRRQDGKWVVQNFVKE 156
                                59*************************************99987655.....******************************** PP

                       FAR1  85 HnHelap 91 
                                Hn el+p
  Rmu_sc0005507.1_g000039.1 157 HNYELSP 163
                                ****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MGLEIDINLA AEEDDNYNED DMDDDNYNED GMNDDNYNED GVGEECGHSN GGESSINMKK  60
NSKPYVGMDF DSDGIAQSFY LEYAKMTGFA ASKIACRRSK VTKEWVEAKY ACTRFGTKRK  120
NDARNPRPYM KIDCKAMLHV KRRQDGKWVV QNFVKEHNYE LSPEDVHYFP CYRNIAFGDL  180
NNISTLYSVG VKPSKIFAAS AKQCGGYQNI GFLQKDMRNF LDKKRQLELE SGDAKAMLEH  240
FISMQED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-45FAR1 family protein