PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005514.1_g000018.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 223aa MW: 24873.3 Da PI: 8.8189

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005514.1_g000018.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.4	1e-32	16	108	1	93
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++r+kC+++C+lap fp e++++f++vhk+FG+snv+k++k+++ +r+++++slv+eA +r++dPv G +g ++ + Rmu_sc0005514.1_g000018.1 16 ACAACKHQRKKCNEGCTLAPFFPVERNREFQAVHKVFGVSNVTKMVKNANVANRRKVVDSLVWEALCRQKDPVLGPYGEYRMIF 99 7*****************************************************************************999888 PP DUF260 85 qqleqlkae 93 +l+ k++ Rmu_sc0005514.1_g000018.1 100 DELKMYKNH 108 888877754 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MHRKNNGTAG AGAVPACAAC KHQRKKCNEG CTLAPFFPVE RNREFQAVHK VFGVSNVTKM 60 VKNANVANRR KVVDSLVWEA LCRQKDPVLG PYGEYRMIFD ELKMYKNHEN QTVPLQVQKG 120 MCYKSVTDLV AWNYETNGIS DGINGGNGIT TTNNNLDYDL QVNENVRINS VPPYGYPLTC 180 EQEIAAEKIK QVKIAADSIA VPVVHQQGHS INNINQQYYI SGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	7e-38	LBD family protein