PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005523.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 166aa    MW: 19328.1 Da    PI: 10.1902
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005523.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.87.3e-22391552115
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 
                                ppGfrFhP++++l+++yL +k ++         ++i+e+ d+   eP++L++       +k+++++wyf++   +++      +
  Rmu_sc0005523.1_g000005.1  39 PPGFRFHPSEQQLLSYYLPNKKANPAilgG-YITTIRELsDLRGREPSELQNwscysyGYKGRKRHWYFYTAGVSAE------E 115
                                9*******************9999885421.224599999**********966787765666888*****9987754......5 PP

                        NAM  76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                                + tk+g Wk +gk ++v+s++g + g k+++v+y g+  +
  Rmu_sc0005523.1_g000005.1 116 KNTKQGCWKRKGKVRDVFSRQGVVLGAKTSFVYYYGSPDT 155
                                67899*****************************886544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MIQGCKMAQI DQTPRIKLEY CVYIASVFRK YSKSIDAFPP GFRFHPSEQQ LLSYYLPNKK  60
ANPAILGGYI TTIRELSDLR GREPSELQNW SCYSYGYKGR KRHWYFYTAG VSAEEKNTKQ  120
GCWKRKGKVR DVFSRQGVVL GAKTSFVYYY GSPDTASPVR PYWTRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-16NAC family protein