PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005523.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 181aa    MW: 20758.4 Da    PI: 9.1788
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005523.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21e-2144103357
                                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Rmu_sc0005523.1_g000011.1  44 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 103
                                7*****************99**************************************97 PP
2Wus_type_Homeobox119.12e-3844105465
          Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
  Rmu_sc0005523.1_g000011.1  44 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 105
                                8***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MQALFDLKSF IRPESGPRNK LASPHDHEKK DSSPSQVEMH PGGTRWNPTQ EQIGILEMLY  60
RGGMRTPNAQ QIEQITAQLG KYGKIEGKNV FYWFQNHKAR ERQKQKRSTL GLTHSPRTPT  120
PVITTTGEVL EREEDSPYKR KCRSWAFDCL GDDSSTITCN KDVVEGDRTL ELFPLRPEGM  180
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-63WOX family protein