PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005570.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 231aa    MW: 25884.4 Da    PI: 9.5839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005570.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.71.5e-181563149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+ie +sn qvtfskR+  i+KK  ELS+L++ae+a+ii s+ +k + +
  Rmu_sc0005570.1_g000009.1 15 KKIERESNCQVTFSKRKSCIFKKSRELSTLTGAEIAIIISSPGNKTFSF 63
                               689***************************************9987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MAGRVNRGRQ KIKMKKIERE SNCQVTFSKR KSCIFKKSRE LSTLTGAEIA IIISSPGNKT  60
FSFGHPSVQA IVDRYLSPAT EPPASTDITE KFLENFRIMK LNSLNAECTA LNEELLNCRQ  120
QGEVLKRIAR AGQADEWYGR SLDSMDEEQR DSFKKDLIKL HGIVAQRSKE WHQRQIELMQ  180
QHAAMGAAGG FRDFMSPSVA PIWSFHEGSS SSQGAMHPDA ASSSSSFWQA I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-31M-type_MADS family protein