PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005600.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 778aa MW: 85865.7 Da PI: 7.4512

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005600.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.2e-07	44	86	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E++ + a +q G++ +++I +++ + q++++++ + Rmu_sc0005600.1_g000013.1 44 AWTHQEEQSFFAALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 86 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence
MDSEAHPRQG SILVQEGDPA LAPSTSNHVA IQQPVKKPTR QWAAWTHQEE QSFFAALRQV 60 GKNFEKITCR VQSKNKDQVR HYYYRLVRRM NKLLGPGLYL DSRNSKDTNA AMLRWWSLLE 120 KYSCKASKLH LKPRRFKIFM EALEHQLLKD RKKTVRKRPS QGENCPPEAP STVSNQSRPS 180 EHDRPVKLVL VDSHNIQKSG PGKASLKRSG SIGVNRGNKG DASTMKPARQ RRKPGVVSST 240 AAYKKWEKAA IAGVSLVADA AEHLERTIDK DVGQDKSSAE KNSAVPVGNF LPPMPNFPQN 300 IYAENNINNS VKLKLQLFPI DDSTRKALEM DKHNPHLELT LPTRKKISSV MEHLNRKWGS 360 SSVASGELML FPNSVQQDCP TGYLRWTQDS NVSAGDVYAM IGSPPVFRLR YGWFSTTELG 420 SVSSQAPVAS CTIPVEHDMN VEKMKDPVLE SASISPLSAS NQCVDIHKDL LPSVIKSHSL 480 AQTSAGEPNQ KNNLEGDPTE SASWHEKVAG DEGILRHQGE VDGLRLHNGT ALSAKEWADS 540 LTNISVGDLL SGVPHDLDAN CIDQPLAGRS QCLPQIPFSC DSFDAAIAAH ISRQKNKMGC 600 EPTMVSHVSS IWDAEETCDA FVFQKNSAFR QQSTSSSGVA PPGDCKLMAS TSLVGCDRMV 660 EDLPAVERPI NDPQRDPMDE CQSDPHILES SVKDFNALAD IYWPESLGPL DLELPSSKYH 720 NEDFILNDSL SGLNRLIASS LDAFQNCSFF GSNKKEPTPS VEARETISFS DFKIGNGV

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence

MDSEAHPRQG SILVQEGDPA LAPSTSNHVA IQQPVKKPTR QWAAWTHQEE QSFFAALRQV  60
GKNFEKITCR VQSKNKDQVR HYYYRLVRRM NKLLGPGLYL DSRNSKDTNA AMLRWWSLLE  120
KYSCKASKLH LKPRRFKIFM EALEHQLLKD RKKTVRKRPS QGENCPPEAP STVSNQSRPS  180
EHDRPVKLVL VDSHNIQKSG PGKASLKRSG SIGVNRGNKG DASTMKPARQ RRKPGVVSST  240
AAYKKWEKAA IAGVSLVADA AEHLERTIDK DVGQDKSSAE KNSAVPVGNF LPPMPNFPQN  300
IYAENNINNS VKLKLQLFPI DDSTRKALEM DKHNPHLELT LPTRKKISSV MEHLNRKWGS  360
SSVASGELML FPNSVQQDCP TGYLRWTQDS NVSAGDVYAM IGSPPVFRLR YGWFSTTELG  420
SVSSQAPVAS CTIPVEHDMN VEKMKDPVLE SASISPLSAS NQCVDIHKDL LPSVIKSHSL  480
AQTSAGEPNQ KNNLEGDPTE SASWHEKVAG DEGILRHQGE VDGLRLHNGT ALSAKEWADS  540
LTNISVGDLL SGVPHDLDAN CIDQPLAGRS QCLPQIPFSC DSFDAAIAAH ISRQKNKMGC  600
EPTMVSHVSS IWDAEETCDA FVFQKNSAFR QQSTSSSGVA PPGDCKLMAS TSLVGCDRMV  660
EDLPAVERPI NDPQRDPMDE CQSDPHILES SVKDFNALAD IYWPESLGPL DLELPSSKYH  720
NEDFILNDSL SGLNRLIASS LDAFQNCSFF GSNKKEPTPS VEARETISFS DFKIGNGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.2	0.0	MYB_related family protein